HL_9DOV_066
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9DOV|1|A1|G|3116, 9DOV|1|A1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DOV_066 not in the Motif Atlas
- Homologous match to HL_9PN5_065
- Geometric discrepancy: 0.0698
- The information below is about HL_9PN5_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.5
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 13
Unit IDs
9DOV|1|A1|C|3110
9DOV|1|A1|U|3111
9DOV|1|A1|G|3112
9DOV|1|A1|A|3113
9DOV|1|A1|A|3114
9DOV|1|A1|C|3115
9DOV|1|A1|G|3116
9DOV|1|A1|C|3117
9DOV|1|A1|C|3118
9DOV|1|A1|U|3119
9DOV|1|A1|C|3120
9DOV|1|A1|U|3121
9DOV|1|A1|A|3122
9DOV|1|A1|A|3123
9DOV|1|A1|G|3124
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L9-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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