HL_9DOV_087

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9DOV|1|B5|C|402, 9DOV|1|B5|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|C|393
9DOV|1|B5|C|394
9DOV|1|B5|U|395
9DOV|1|B5|G|396
9DOV|1|B5|A|397
9DOV|1|B5|G|398
9DOV|1|B5|A|399
9DOV|1|B5|A|400
9DOV|1|B5|A|401
9DOV|1|B5|C|402
9DOV|1|B5|G|403
9DOV|1|B5|G|404

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A

Chain BY

40S ribosomal protein S24-A