HL_9DOV_110

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

9DOV|1|B5|U|1557, 9DOV|1|B5|U|1558, 9DOV|1|B5|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|A|1550
9DOV|1|B5|U|1551
9DOV|1|B5|U|1552
9DOV|1|B5|G|1553
9DOV|1|B5|U|1554
9DOV|1|B5|A|1555
9DOV|1|B5|A|1556
9DOV|1|B5|U|1557
9DOV|1|B5|U|1558
9DOV|1|B5|A|1559
9DOV|1|B5|U|1560
9DOV|1|B5|U|1561

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

Small ribosomal subunit protein uS19

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A

Chain Bd

Small ribosomal subunit protein uS14A