HL_9DOV_110
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9DOV|1|B5|U|1557, 9DOV|1|B5|U|1558, 9DOV|1|B5|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DOV_110 not in the Motif Atlas
- Homologous match to HL_9PN5_108
- Geometric discrepancy: 0.1684
- The information below is about HL_9PN5_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.4
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9DOV|1|B5|A|1550
9DOV|1|B5|U|1551
9DOV|1|B5|U|1552
9DOV|1|B5|G|1553
9DOV|1|B5|U|1554
9DOV|1|B5|A|1555
9DOV|1|B5|A|1556
9DOV|1|B5|U|1557
9DOV|1|B5|U|1558
9DOV|1|B5|A|1559
9DOV|1|B5|U|1560
9DOV|1|B5|U|1561
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- Small ribosomal subunit protein uS19
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain Bd
- Small ribosomal subunit protein uS14A
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