HL_9DP7_021
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 9DP7|1|A1|A|913, 9DP7|1|A1|G|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DP7_021 not in the Motif Atlas
- Homologous match to HL_9PN5_021
- Geometric discrepancy: 0.0398
- The information below is about HL_9PN5_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28253.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
9DP7|1|A1|G|910
9DP7|1|A1|C|911
9DP7|1|A1|G|912
9DP7|1|A1|A|913
9DP7|1|A1|A|914
9DP7|1|A1|A|915
9DP7|1|A1|G|916
9DP7|1|A1|A|917
9DP7|1|A1|C|918
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aj
- 60S ribosomal protein L37-A
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