HL_9DUK_028

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9DUK|1|A|C|1359, 9DUK|1|A|U|1364

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DUK_028 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.2005

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9DUK|1|A|G|1356
9DUK|1|A|A|1357
9DUK|1|A|U|1358
9DUK|1|A|C|1359
9DUK|1|A|A|1360
9DUK|1|A|G|1361
9DUK|1|A|A|1362
9DUK|1|A|A|1363
9DUK|1|A|U|1364
9DUK|1|A|G|1365
9DUK|1|A|C|1366

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14