HL_9E0N_001
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- UAGGAGGCUG
- Length
- 10 nucleotides
- Bulged bases
- 9E0N|1|A|A|57, 9E0N|1|A|G|58, 9E0N|1|A|G|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E0N_001 not in the Motif Atlas
- Geometric match to HL_7A0S_014
- Geometric discrepancy: 0.3724
- The information below is about HL_7A0S_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9E0N|1|A|U|56
9E0N|1|A|A|57
9E0N|1|A|G|58
9E0N|1|A|G|59
9E0N|1|A|A|60
9E0N|1|A|G|61
9E0N|1|A|G|62
9E0N|1|A|C|63
9E0N|1|A|U|64
9E0N|1|A|G|65
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL34
- Chain U
- Large ribosomal subunit protein uL23
- Chain Z
- Large ribosomal subunit protein uL29
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