HL_9E0N_020

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

9E0N|1|A|U|739

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0N_020 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.2337

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9E0N|1|A|U|735
9E0N|1|A|G|736
9E0N|1|A|A|737
9E0N|1|A|A|738
9E0N|1|A|U|739
9E0N|1|A|A|740
9E0N|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL33A

Chain 6

Large ribosomal subunit protein bL35

Chain M

Large ribosomal subunit protein uL15