3D structure

PDB id
9E0N (explore in PDB, NAKB, or RNA 3D Hub)
Description
M. smegmatis unmethylated 70S ribosome structure
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
UUUACUAAAAA
Length
11 nucleotides
Bulged bases
9E0N|1|A|A|1997, 9E0N|1|A|C|1998, 9E0N|1|A|U|1999, 9E0N|1|A|A|2003
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9E0N_044 not in the Motif Atlas
Geometric match to HL_8P9A_157
Geometric discrepancy: 0.2071
The information below is about HL_8P9A_157
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87681.1
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

9E0N|1|A|U|1994
9E0N|1|A|U|1995
9E0N|1|A|U|1996
9E0N|1|A|A|1997
9E0N|1|A|C|1998
9E0N|1|A|U|1999
9E0N|1|A|A|2000
9E0N|1|A|A|2001
9E0N|1|A|A|2002
9E0N|1|A|A|2003
9E0N|1|A|A|2004

Current chains

Chain A
23S rRNA

Nearby chains

Chain 5
Large ribosomal subunit protein bL34
Chain C
Large ribosomal subunit protein uL2

Coloring options:


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