HL_9E0N_098
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E0N_098 not in the Motif Atlas
- Geometric match to HL_5J7L_028
- Geometric discrepancy: 0.3061
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9E0N|1|a|C|1296
9E0N|1|a|U|1297
9E0N|1|a|G|1298
9E0N|1|a|C|1299
9E0N|1|a|A|1300
9E0N|1|a|A|1301
9E0N|1|a|C|1302
9E0N|1|a|U|1303
9E0N|1|a|C|1304
9E0N|1|a|G|1305
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
Coloring options: