HL_9E0P_006

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9E0P|1|A|A|195, 9E0P|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1895

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9E0P|1|A|G|193
9E0P|1|A|A|194
9E0P|1|A|A|195
9E0P|1|A|A|196
9E0P|1|A|C|197
9E0P|1|A|A|198
9E0P|1|A|U|199
9E0P|1|A|C|200

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL15

Chain Y

Large ribosomal subunit protein bL28