HL_9E0P_010

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

9E0P|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_010 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.1702

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9E0P|1|A|U|387
9E0P|1|A|U|388
9E0P|1|A|G|389
9E0P|1|A|G|390
9E0P|1|A|G|391
9E0P|1|A|A|392
9E0P|1|A|U|393
9E0P|1|A|G|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL24