HL_9E0P_012

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

9E0P|1|A|G|411, 9E0P|1|A|A|412, 9E0P|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_012 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1973

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9E0P|1|A|G|409
9E0P|1|A|U|410
9E0P|1|A|G|411
9E0P|1|A|A|412
9E0P|1|A|G|413
9E0P|1|A|A|414
9E0P|1|A|G|415
9E0P|1|A|C|416
9E0P|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain V

Large ribosomal subunit protein uL24