HL_9E0P_019

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_019 not in the Motif Atlas

Geometric match to HL_4LFB_028

Geometric discrepancy: 0.13

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9E0P|1|A|C|723
9E0P|1|A|G|724
9E0P|1|A|A|725
9E0P|1|A|A|726
9E0P|1|A|A|727
9E0P|1|A|G|728

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL35

Chain M

Large ribosomal subunit protein uL15