HL_9E0P_020

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

9E0P|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_020 not in the Motif Atlas

Geometric match to HL_1XJR_001

Geometric discrepancy: 0.2401

The information below is about HL_1XJR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9E0P|1|A|U|735
9E0P|1|A|G|736
9E0P|1|A|A|737
9E0P|1|A|A|738
9E0P|1|A|U|739
9E0P|1|A|A|740
9E0P|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL33A

Chain 6

Large ribosomal subunit protein bL35

Chain M

Large ribosomal subunit protein uL15