HL_9E0P_027

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_027 not in the Motif Atlas

Geometric match to HL_4WF9_028

Geometric discrepancy: 0.254

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9E0P|1|A|G|1096
9E0P|1|A|A|1097
9E0P|1|A|A|1098
9E0P|1|A|A|1099
9E0P|1|A|C|1100
9E0P|1|A|A|1101
9E0P|1|A|G|1102
9E0P|1|A|C|1103

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL30

Chain 8

50S ribosomal protein bL37

Chain B

5S ribosomal RNA; 5S rRNA