HL_9E0P_035

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9E0P|1|A|U|1511, 9E0P|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_035 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.3253

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|G|1504
9E0P|1|A|U|1505
9E0P|1|A|U|1506
9E0P|1|A|G|1507
9E0P|1|A|A|1508
9E0P|1|A|U|1509
9E0P|1|A|A|1510
9E0P|1|A|U|1511
9E0P|1|A|U|1512
9E0P|1|A|C|1513

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23