HL_9E0P_054

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GACGGCAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_054 not in the Motif Atlas

Geometric match to HL_4V9F_057

Geometric discrepancy: 0.2184

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9E0P|1|A|G|2528
9E0P|1|A|A|2529
9E0P|1|A|C|2530
9E0P|1|A|G|2531
9E0P|1|A|G|2532
9E0P|1|A|C|2533
9E0P|1|A|A|2534
9E0P|1|A|A|2535
9E0P|1|A|U|2536

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5