HL_9E0P_060

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

9E0P|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_060 not in the Motif Atlas

Geometric match to HL_5J7L_194

Geometric discrepancy: 0.1298

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9E0P|1|A|U|2752
9E0P|1|A|G|2753
9E0P|1|A|G|2754
9E0P|1|A|A|2755
9E0P|1|A|G|2756
9E0P|1|A|C|2757
9E0P|1|A|A|2758
9E0P|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6