HL_9E0P_076

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGUGAUGGC

Length

9 nucleotides

Bulged bases

9E0P|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_076 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.2107

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9E0P|1|a|G|259
9E0P|1|a|G|260
9E0P|1|a|U|261
9E0P|1|a|G|262
9E0P|1|a|A|263
9E0P|1|a|U|264
9E0P|1|a|G|265
9E0P|1|a|G|266
9E0P|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20