HL_9E0P_079

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9E0P|1|a|A|344, 9E0P|1|a|C|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_079 not in the Motif Atlas

Geometric match to HL_7LYF_002

Geometric discrepancy: 0.2783

The information below is about HL_7LYF_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9E0P|1|a|C|342
9E0P|1|a|U|343
9E0P|1|a|A|344
9E0P|1|a|C|345
9E0P|1|a|G|346
9E0P|1|a|G|347

Current chains

Chain a

16S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL14

Chain Q

Large ribosomal subunit protein bL19