HL_9E1S_033

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9E1S|1|I|A|1196, 9E1S|1|I|A|1198, 9E1S|1|I|A|1199, 9E1S|1|I|G|1200, 9E1S|1|I|C|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_033 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.5808

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9E1S|1|I|C|1193
9E1S|1|I|U|1194
9E1S|1|I|U|1195
9E1S|1|I|A|1196
9E1S|1|I|G|1197
9E1S|1|I|A|1198
9E1S|1|I|A|1199
9E1S|1|I|G|1200
9E1S|1|I|C|1201
9E1S|1|I|A|1202
9E1S|1|I|G|1203

Current chains

Chain I

23S ribosomal RNA

Nearby chains