HL_9E1S_034

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

9E1S|1|I|A|1224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_034 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.5943

The information below is about HL_7A0S_029

Detailed Annotation

GNRA related

Broad Annotation

T-loop

Motif group

HL_27656.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9E1S|1|I|C|1221
9E1S|1|I|G|1222
9E1S|1|I|U|1223
9E1S|1|I|A|1224
9E1S|1|I|A|1225
9E1S|1|I|U|1226
9E1S|1|I|A|1227
9E1S|1|I|G|1228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein bL36

Chain G

50S ribosomal protein L6