HL_9E1S_072

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9E1S|1|I|G|2989, 9E1S|1|I|C|2993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_072 not in the Motif Atlas

Homologous match to HL_8B0X_093

Geometric discrepancy: 0.0921

The information below is about HL_8B0X_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9E1S|1|I|C|2983
9E1S|1|I|U|2984
9E1S|1|I|G|2985
9E1S|1|I|A|2986
9E1S|1|I|A|2987
9E1S|1|I|A|2988
9E1S|1|I|G|2989
9E1S|1|I|C|2990
9E1S|1|I|A|2991
9E1S|1|I|U|2992
9E1S|1|I|C|2993
9E1S|1|I|U|2994
9E1S|1|I|A|2995
9E1S|1|I|A|2996
9E1S|1|I|G|2997

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein bL36

Chain G

50S ribosomal protein L6