HL_9E6Q_006

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9E6Q|1|1|A|177, 9E6Q|1|1|A|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9E6Q|1|1|G|175
9E6Q|1|1|A|176
9E6Q|1|1|A|177
9E6Q|1|1|A|178
9E6Q|1|1|C|179
9E6Q|1|1|A|180
9E6Q|1|1|U|181
9E6Q|1|1|C|182

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL13

Chain AL

Large ribosomal subunit protein uL15

Chain AM

50S ribosomal protein L15e

Chain Ah

eL42