HL_9E6Q_029

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGUUG

Length

5 nucleotides

Bulged bases

9E6Q|1|1|G|1300, 9E6Q|1|1|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_029 not in the Motif Atlas

Geometric match to HL_8C3A_004

Geometric discrepancy: 0.1146

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

9E6Q|1|1|C|1299
9E6Q|1|1|G|1300
9E6Q|1|1|U|1301
9E6Q|1|1|U|1302
9E6Q|1|1|G|1303

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AL

Large ribosomal subunit protein uL15

Chain AP

Large ribosomal subunit protein eL18