HL_9E6Q_037

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGUAAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_037 not in the Motif Atlas

Homologous match to HL_4V9F_039

Geometric discrepancy: 0.2547

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9E6Q|1|1|C|1638
9E6Q|1|1|G|1639
9E6Q|1|1|U|1640
9E6Q|1|1|A|1641
9E6Q|1|1|A|1642
9E6Q|1|1|U|1643
9E6Q|1|1|G|1644

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain Ai

Large ribosomal subunit protein eL43