HL_9E6Q_040
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGACGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9E6Q|1|1|G|1758, 9E6Q|1|1|A|1760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E6Q_040 not in the Motif Atlas
- Homologous match to HL_4V9F_042
- Geometric discrepancy: 0.1149
- The information below is about HL_4V9F_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89567.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9E6Q|1|1|C|1754
9E6Q|1|1|G|1755
9E6Q|1|1|A|1756
9E6Q|1|1|C|1757
9E6Q|1|1|G|1758
9E6Q|1|1|C|1759
9E6Q|1|1|A|1760
9E6Q|1|1|G|1761
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4
- Chain AT
- Large ribosomal subunit protein uL22
- Chain Ad
- Large ribosomal subunit protein eL37
- Chain Af
- Large ribosomal subunit protein eL39
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