HL_9E6Q_042

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9E6Q|1|1|U|1837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_042 not in the Motif Atlas

Homologous match to HL_4V9F_044

Geometric discrepancy: 0.0636

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9E6Q|1|1|C|1835
9E6Q|1|1|U|1836
9E6Q|1|1|U|1837
9E6Q|1|1|C|1838
9E6Q|1|1|G|1839
9E6Q|1|1|G|1840

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Ai

Large ribosomal subunit protein eL43