HL_9EBB_060

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9EBB|1|I|A|2506, 9EBB|1|I|C|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9EBB_060 not in the Motif Atlas

Homologous match to HL_8B0X_081

Geometric discrepancy: 0.0766

The information below is about HL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9EBB|1|I|C|2502
9EBB|1|I|U|2503
9EBB|1|I|A|2504
9EBB|1|I|A|2505
9EBB|1|I|A|2506
9EBB|1|I|A|2507
9EBB|1|I|U|2508
9EBB|1|I|G|2509
9EBB|1|I|U|2510
9EBB|1|I|A|2511
9EBB|1|I|A|2512
9EBB|1|I|C|2513
9EBB|1|I|G|2514

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27