HL_9EBV_004
3D structure
- PDB id
- 9EBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.519 Å
Loop
- Sequence
- GUUGGUAGUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EBV_004 not in the Motif Atlas
- Homologous match to HL_8UIW_002
- Geometric discrepancy: 0.2173
- The information below is about HL_8UIW_002
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_98864.4
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9EBV|1|M|G|21
9EBV|1|M|U|22
9EBV|1|M|U|23
9EBV|1|M|G|24
9EBV|1|M|G|25
9EBV|1|M|U|26
9EBV|1|M|A|27
9EBV|1|M|G|28
9EBV|1|M|U|29
9EBV|1|M|C|30
Current chains
- Chain M
- RNA (81-MER)
Nearby chains
- Chain A
- azaaromatic riboswitch aptamer (yjdF RNA)
Coloring options: