HL_9ED0_011

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_011 not in the Motif Atlas

Geometric match to HL_8CRE_204

Geometric discrepancy: 0.1324

The information below is about HL_8CRE_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9ED0|1|2|A|569
9ED0|1|2|C|570
9ED0|1|2|U|571
9ED0|1|2|PSU|572
9ED0|1|2|U|573
9ED0|1|2|A|574
9ED0|1|2|A|575
9ED0|1|2|A2M|576
9ED0|1|2|U|577
9ED0|1|2|C|578
9ED0|1|2|C|579
9ED0|1|2|U|580
9ED0|1|2|U|581

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain Y

40S ribosomal protein S24