HL_9ED0_014

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_014 not in the Motif Atlas

Geometric match to HL_8CRE_210

Geometric discrepancy: 0.0695

The information below is about HL_8CRE_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9ED0|1|2|A|957
9ED0|1|2|G|958
9ED0|1|2|G|959
9ED0|1|2|U|960
9ED0|1|2|G|961
9ED0|1|2|A|962
9ED0|1|2|A|963
9ED0|1|2|A|964
9ED0|1|2|U|965
9ED0|1|2|U|966

Current chains

Chain 2

rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11