HL_9ED0_020
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9ED0|1|2|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9ED0_020 not in the Motif Atlas
- Geometric match to HL_8CRE_216
- Geometric discrepancy: 0.0892
- The information below is about HL_8CRE_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|G|1245
9ED0|1|2|A|1246
9ED0|1|2|C|1247
9ED0|1|2|B8N|1248
9ED0|1|2|C|1249
9ED0|1|2|A|1250
9ED0|1|2|A|1251
9ED0|1|2|C|1252
9ED0|1|2|A|1253
9ED0|1|2|C|1254
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain Q
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain h
- La-related protein 1
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