HL_9ED0_023

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9ED0|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_023 not in the Motif Atlas

Geometric match to HL_8P9A_218

Geometric discrepancy: 0.0955

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9ED0|1|2|G|1366
9ED0|1|2|U|1367
9ED0|1|2|U|1368
9ED0|1|2|A|1369
9ED0|1|2|A|1370
9ED0|1|2|U|1371
9ED0|1|2|U|1372
9ED0|1|2|C|1373

Current chains

Chain 2

rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17