HL_9ED0_027

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9ED0|1|2|C|1660, 9ED0|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_027 not in the Motif Atlas

Geometric match to HL_8CRE_224

Geometric discrepancy: 0.3101

The information below is about HL_8CRE_224

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9ED0|1|2|G|1658
9ED0|1|2|U|1659
9ED0|1|2|C|1660
9ED0|1|2|A|1661
9ED0|1|2|U|1662
9ED0|1|2|A|1663
9ED0|1|2|A|1664
9ED0|1|2|G|1665
9ED0|1|2|C|1666

Current chains

Chain 2

rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14