HL_9EHO_060
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCUAUCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_060 not in the Motif Atlas
- Homologous match to HL_9AXU_071
- Geometric discrepancy: 0.1897
- The information below is about HL_9AXU_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9EHO|1|8|C|46
9EHO|1|8|G|47
9EHO|1|8|G|48
9EHO|1|8|C|49
9EHO|1|8|U|50
9EHO|1|8|A|51
9EHO|1|8|U|52
9EHO|1|8|C|53
9EHO|1|8|C|54
9EHO|1|8|G|55
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
- Chain l
- Large ribosomal subunit protein eL39
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