HL_9EHO_086
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 9EHO|1|AA|C|2565, 9EHO|1|AA|G|2570
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9EHO_086 not in the Motif Atlas
- Homologous match to HL_9PN5_109
- Geometric discrepancy: 0.1515
- The information below is about HL_9PN5_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25307.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9EHO|1|AA|G|2563
9EHO|1|AA|U|2564
9EHO|1|AA|C|2565
9EHO|1|AA|A|2566
9EHO|1|AA|U|2567
9EHO|1|AA|C|2568
9EHO|1|AA|A|2569
9EHO|1|AA|G|2570
9EHO|1|AA|C|2571
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain RR
- 40S ribosomal protein S16
- Chain TT
- Small ribosomal subunit protein uS13
- Chain UU
- 40S ribosomal protein S19
- Chain VV
- Small ribosomal subunit protein uS10
- Chain ee
- Small ribosomal subunit protein uS14
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