HL_9F1B_042

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9F1B|1|B5|G|294, 9F1B|1|B5|A|295, 9F1B|1|B5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_042 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1093

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9F1B|1|B5|C|289
9F1B|1|B5|U|290
9F1B|1|B5|U|291
9F1B|1|B5|G|292
9F1B|1|B5|G|293
9F1B|1|B5|G|294
9F1B|1|B5|A|295
9F1B|1|B5|A|296
9F1B|1|B5|U|297
9F1B|1|B5|G|298

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Bo

Large ribosomal subunit protein eL42