HL_9F1B_057

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9F1B|1|B5|A|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_057 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1B|1|B5|G|1582
9F1B|1|B5|C|1583
9F1B|1|B5|G|1584
9F1B|1|B5|A|1585
9F1B|1|B5|A|1586
9F1B|1|B5|A|1587
9F1B|1|B5|G|1588
9F1B|1|B5|A|1589
9F1B|1|B5|C|1590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37