HL_9F1B_060

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9F1B|1|B5|G|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_060 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3828

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9F1B|1|B5|C|1755
9F1B|1|B5|U|1756
9F1B|1|B5|G|1757
9F1B|1|B5|G|1758
9F1B|1|B5|C|1759
9F1B|1|B5|G|1760
9F1B|1|B5|U|1761
9F1B|1|B5|G|1762

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29