HL_9F1B_088

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9F1B|1|B5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_088 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.106

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9F1B|1|B5|U|3528
9F1B|1|B5|C|3529
9F1B|1|B5|U|3530
9F1B|1|B5|A|3531
9F1B|1|B5|A|3532
9F1B|1|B5|U|3533
9F1B|1|B5|U|3534
9F1B|1|B5|A|3535
9F1B|1|B5|G|3536

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Ribosomal protein L23