HL_9F1B_118

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9F1B|1|A2|U|1301, 9F1B|1|A2|G|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1B_118 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1827

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9F1B|1|A2|A|1296
9F1B|1|A2|U|1297
9F1B|1|A2|U|1298
9F1B|1|A2|G|1299
9F1B|1|A2|A|1300
9F1B|1|A2|U|1301
9F1B|1|A2|A|1302
9F1B|1|A2|G|1303
9F1B|1|A2|C|1304
9F1B|1|A2|U|1305

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Ao

40S ribosomal protein uS19