HL_9F1C_017

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_017 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4004

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9F1C|1|A2|U|886
9F1C|1|A2|A|887
9F1C|1|A2|U|888
9F1C|1|A2|U|889
9F1C|1|A2|U|890
9F1C|1|A2|U|891
9F1C|1|A2|G|892
9F1C|1|A2|U|893
9F1C|1|A2|U|894
9F1C|1|A2|G|895
9F1C|1|A2|G|896
9F1C|1|A2|U|897
9F1C|1|A2|U|898
9F1C|1|A2|U|899
9F1C|1|A2|U|900
9F1C|1|A2|C|901
9F1C|1|A2|G|902

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11