HL_9F1C_025

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9F1C|1|A2|U|1301

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_025 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.197

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9F1C|1|A2|A|1296
9F1C|1|A2|U|1297
9F1C|1|A2|U|1298
9F1C|1|A2|G|1299
9F1C|1|A2|A|1300
9F1C|1|A2|U|1301
9F1C|1|A2|A|1302
9F1C|1|A2|G|1303
9F1C|1|A2|C|1304
9F1C|1|A2|U|1305

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Ao

40S ribosomal protein uS19