HL_9F1C_053
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1C_053 not in the Motif Atlas
- Geometric match to HL_1ZCI_001
- Geometric discrepancy: 0.3798
- The information below is about HL_1ZCI_001
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_94376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F1C|1|B5|C|1392
9F1C|1|B5|C|1393
9F1C|1|B5|U|1394
9F1C|1|B5|U|1395
9F1C|1|B5|C|1396
9F1C|1|B5|C|1397
9F1C|1|B5|A|1398
9F1C|1|B5|G|1399
9F1C|1|B5|U|1400
9F1C|1|B5|C|1401
9F1C|1|B5|C|1402
9F1C|1|B5|G|1403
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BE
- 60S ribosomal protein L6
- Chain BF
- Ribosomal Protein uL30
- Chain BQ
- Large ribosomal subunit protein eL18
- Chain Bb
- 60S ribosomal protein L29
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