HL_9F1C_117

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AGGUGAAAU(PSU)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_117 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1095

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9F1C|1|A2|A|958
9F1C|1|A2|G|959
9F1C|1|A2|G|960
9F1C|1|A2|U|961
9F1C|1|A2|G|962
9F1C|1|A2|A|963
9F1C|1|A2|A|964
9F1C|1|A2|A|965
9F1C|1|A2|U|966
9F1C|1|A2|PSU|967

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain Ae

Ribosomal protein S5

Chain An

Small ribosomal subunit protein uS11