3D structure

PDB id
9F1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
UGUAACAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9F1D_064 not in the Motif Atlas
Homologous match to HL_8C3A_028
Geometric discrepancy: 0.1863
The information below is about HL_8C3A_028
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

9F1D|1|B5|U|1945
9F1D|1|B5|G|1946
9F1D|1|B5|U|1947
9F1D|1|B5|A|1948
9F1D|1|B5|A|1949
9F1D|1|B5|C|1950
9F1D|1|B5|A|1951
9F1D|1|B5|A|1952

Current chains

Chain B5
28S rRNA

Nearby chains

Chain Bs
Large ribosomal subunit protein uL10
Chain Bt
60S ribosomal protein L12

Coloring options:


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