HL_9F1D_088

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9F1D|1|B5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_088 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1306

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9F1D|1|B5|U|3528
9F1D|1|B5|C|3529
9F1D|1|B5|U|3530
9F1D|1|B5|A|3531
9F1D|1|B5|A|3532
9F1D|1|B5|U|3533
9F1D|1|B5|U|3534
9F1D|1|B5|A|3535
9F1D|1|B5|G|3536

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Ribosomal protein L23