HL_9F58_004

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

9F58|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_004 not in the Motif Atlas

Homologous match to HL_8P9A_189

Geometric discrepancy: 0.1888

The information below is about HL_8P9A_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79745.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9F58|1|4|G|124
9F58|1|4|U|125
9F58|1|4|A|126
9F58|1|4|U|127
9F58|1|4|U|128
9F58|1|4|C|129

Current chains

Chain 4

5.8S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein eL41B

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain z

60S ribosomal protein L25