HL_9F58_009

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

9F58|1|a|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_009 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0655

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9F58|1|a|U|194
9F58|1|a|U|195
9F58|1|a|G|196
9F58|1|a|G|197
9F58|1|a|A|198
9F58|1|a|A|199
9F58|1|a|C|200
9F58|1|a|A|201

Current chains

Chain a

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L4-A

Chain J

60S ribosomal protein L26-A

Chain Q

60S ribosomal protein L32